benoukraflab Goto Github PK
Name: Benoukraf Lab
Type: User
Company: Memorial University of Newfoundland
Location: St. John's
Name: Benoukraf Lab
Type: User
Company: Memorial University of Newfoundland
Location: St. John's
ForkedTF is an R-library that introduces Forked-PMW (FPMW) and Forked-Sequence Logos (F-Logos) to provide a more comprehensive depiction of the sequence affinity of a Transcription factor (TF) of interest, including its DNA sequence and DNA methylation level, along with a segregated list of partner TFs.
forkedTF: Representing Transcription Factor Dimer Binding Sites Using Forked-Position Weight Matrices and Forked-Sequence Logos
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.
Repeat annotation tool
Structural variant caller for low-depth long-read sequencing data
Archived version 1.0.2
This is an extension for computing the percentage of colocalization (Spatial overlap between different channels) of Z-stack images.
Analysis pipelines for sequencing data
TFregulomeR reveals transcription factors’ context-specific features and functions
TFregulomeR reveals transcription factors’ context-specific features and functions
Code pertaining to the usf1 paper revision
WDL Analysis Research Pipelines
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