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belowlab's Projects

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Similarity networks of biosynthetic gene clusters

concordance-analysis icon concordance-analysis

This analysis was performed to determine if there was concordance between our ancestries-specific GWAS summary statistics. Please see Shaw et al. 2021

drive icon drive

A cli tool to analyze ibd sharing for a specific locus for multiple phenotypes

fastenloc icon fastenloc

Colocalization analysis of genetic association signals

gargle icon gargle

Infrastructure for calling Google APIs from R, including auth

gnova icon gnova

A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.

hap-ibd icon hap-ibd

The hap-ibd program detects identity-by-descent segments in phased genotype data.

htslib icon htslib

C library for high-throughput sequencing data formats

ilash icon ilash

iLASH - IBD Estimation Using Locality Sensitive Hashing

immerge icon immerge

Tool to merge VCF genotype files at scale

ldak icon ldak

A Fork of Doug Speed's LDAK, Linkage-Disequilibrium Adjusted Kinships

ldsc icon ldsc

LD Score Regression (LDSC)

peer icon peer

A factor analysis package

phaser icon phaser

phasing and Allele Specific Expression from RNA-seq

plink-ng icon plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

popcorn icon popcorn

Software for estimating correlation of trait effect sizes across populations

prscs icon prscs

Polygenic prediction via continuous shrinkage priors

r-peer icon r-peer

A readonly copy of peer packaged as an github_install capable R package

rcpp icon rcpp

Seamless R and C++ Integration

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