ImportError: /lib64/libc.so.6: version `GLIBC_2.18' not found about tigmint HOT 7 CLOSED

Hi, @QiushiLi. I'd suggest reinstalling Linuxbrew from scratch. It will install glibc 2.23 for you. Since you have root access on your machine, installation is quite painless.
See http://linuxbrew.sh/#install-linuxbrew
Remove your old installation of Linuxbrew

rm -rf /home/linuxbrew/.linuxbrew/

and reinstall Linuxbrew

sh -c "$(curl -fsSL https://raw.githubusercontent.com/Linuxbrew/install/master/install.sh)"

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Thanks Lauren & Shaun!

@lcoombe Both answers are yes... I "source activate" the environment with python3 installed, and double checked with "which python" .

@sjackman The linuxbrew was sudo installed from scratch (I did it several time to debug). I typed the same command lines you wrote here, but it seems like /home/linuxbrew/.linuxbrew/lib/libstdc++.so.6 still requires the system glibc, learned from the error info.

Our server's built environment has troubles now due to the failed sudo glibc update... waiting for help from the IT support. But the good news is I managed to run the basic tigmint on my mac.

Qiushi

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Hi Qiushi,

Are you running the job on the same server where you compiled pybedtools? Also, are you ensuring that your desired python3 installation is being used? (Ie. runningwhich python3 prints the path to your conda python installation with pybedtools?)
You could also try installing pybedtools with conda install (as per daler/pybedtools#187)
@sjackman might have some suggestions as well!

Lauren

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I tried to sudo update glibc with local built but failed.

I think that's the source of your trouble. Installing Glibc 2.18 (quite old, released on 2013-08-12) in /usr could cause much grief.

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@QiushiLi
Did you get it working?
I had this problem as well on my CentOS 7 but managed to fix it by using pyenv "pyenv local 3.6.6" in YouCompleteMe directory.

[njia@fed YouCompleteMe]$ pyenv versions
  system
  2.7.12
* 3.6.6 (set by /home/njia/.vim/plugged/YouCompleteMe/.python-version)

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thanks , this actually worked for me !!

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