Error when attempting tigmint-make arcs about tigmint HOT 2 CLOSED

Hi @kedougan,

It looks like you are missing the ref and G parameters for specifying the reference to use and the genome size. The reference would just be needed to run the full metrics (Not required for ARCS).

If you do not have a reference for this assembly work, then I'd recommend just running ARCS separately (With target arcs), and running abyss-fac for the reference-free stats.
If you do have a reference, you can run your above command once you specify those parameters (https://github.com/bcgsc/tigmint#usage), but I'd recommend running QUAST for reference-based assembly quality metrics. When Tigmint was first developed, QUAST couldn't handle large genomes, but it does now. If it is of interest, we could put updating the metrics target to run QUAST on our TODO list.

Thank you for your interest in Tigmint!
Lauren

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This issue has been automatically marked as stale because it has not had any recent activity. It will be closed if no further activity occurs. Thank you for your interest in Tigmint!

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