balabanmetin Goto Github PK

apples

distance based phylogenetic placement

apples2-data

bac10

balabanmetin.github.io

centroid_edge_decomposition

cheat-sheet-host

comparetrees

The MicrobesOnline tree comparison tool

cpython

The Python programming language

cse282

drosophila-genomes

genomes of fruit fly species & gold standard phylogeny

dtu-02561-opengl-computergraphics

Exercises, Project and report of OpenGL projects

fastloo

Subquadratic leave-one-out outlier detection via a APPLES-2

fastme-personal-copy

Distance Based Phylogenetic Placement Tool

fenix-os-ver-d

Multiprocess single-threaded operating system compatible with ELF-type executables.

gg2_protocols

hatchet

HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.

hgt_simulation

hslu

hslU test dataset for phylogenetic placement

lsediag

Identify leaves that disrupt additivity

mainlines

quickly reduce MSA size by removing low-diversity sequences

memallocator

implementation of malloc and free functions using a dedicated memory which can be considered as the memory of an embedded system.

misa

mixed sample analysis

misa-data

Data & Scripts used in paper "Phylogenetic double placement of mixed samples"

newcnbulk

njreestimate

NJ reestimation of tree branch lengths when data contains duplicates

overlap-statistics

pbs-torque

pip-conda-tutorial-diameter

placecomp

placement comparison

placement-testing

alignment-free placement testing APPLES part