bacpop Goto Github PK
Name: Bacterial population genetics
Type: Organization
Bio: Pathogen Informatics and Modelling @ EMBL-EBI / Bacterial Evolutionary Epidemiology Group @ Imperial College London
Location: United Kingdom
Blog: www.bacpop.org
Name: Bacterial population genetics
Type: Organization
Bio: Pathogen Informatics and Modelling @ EMBL-EBI / Bacterial Evolutionary Epidemiology Group @ Imperial College London
Location: United Kingdom
Blog: www.bacpop.org
Scripts for adaptive sampling analysis
AMR prediction from S. pneumoniae assemblies in the browser
Code for group website
Search engine for bacterial genomic information.
Backend API for the BacQuerya web app.
This repo is for to summarise pubmed texts with a given gene/species query
Scripts to process publicly available information for indexing.
Frontend code for beebop
Deploy scripts for beebop
Lineage databases for beebop_py tests
Python API for beebop
Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
Calculate sensible core gene thresholds for metagenomic data
A collection of models that can be implemented, simulated and fitted using odin, dust and mcstate.
Draw A Tree And Colour it IN
Bifrost graph gene caller.
Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
A viewer of odin.js models from the biomodels database
Pan-genome inference and genotyping with long noisy or short accurate reads
Pangenome simulator
Population analysis PIPEline 🛠🧬
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
Jekyll compiled website for poppunk.net
Network tools for PopPUNK
Library of sketching functions used by PopPUNK
Read Until scripts with graph alignment
An R package for translating SBML models into odin models.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.