bacpop Goto Github PK

amr_prediction

amr_reactapp

AMR prediction from S. pneumoniae assemblies in the browser

bacpop-website

Code for group website

bacquerya

Search engine for bacterial genomic information.

bacquerya-api

Backend API for the BacQuerya web app.

bacquerya-llm

This repo is for to summarise pubmed texts with a given gene/species query

bacquerya-processing

Scripts to process publicly available information for indexing.

beebop

Frontend code for beebop

beebop-deploy

Deploy scripts for beebop

beebop_data

Lineage databases for beebop_py tests

beebop_py

Python API for beebop

celebrimbor

cgt

Calculate sensible core gene thresholds for metagenomic data

compartmental-models-odin-dust

A collection of models that can be implemented, simulated and fitted using odin, dust and mcstate.

datacin

Draw A Tree And Colour it IN

genesearch

ggcaller

Bifrost graph gene caller.

mag_pangenome_pipeline

mandrake

Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

pandora

Pan-genome inference and genotyping with long noisy or short accurate reads

poppipe

Population analysis PIPEline 🛠🧬

poppunk

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

poppunk_jekyll_site

Jekyll compiled website for poppunk.net

pp-netlib

Network tools for PopPUNK

pp-sketchlib

Library of sketching functions used by PopPUNK

sbmltoodin

An R package for translating SBML models into odin models.

simevonn

Neural Network modelling for Fisher - Wright Simulation of Evolution

ska.rust

Split k-mer analysis – version 2

ska2

Split Kmer Analysis - version 2

ska_simulations

Mutation simulation to test ska.rust sensitivity