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-2014-03-31-jre

carpentry

2014-03-31-jre

carpentry

applied_bioinformatics_2021

Repository for code generated during the group project for the course Applied Bioinformatics at Uppsala University, autumn 2021.

applied_bioinformatics_group_4

automatic-pipeline-for-analysing-ngs-data-using-mosaik-and-custom-tools

butterfly

clusteranalysistools

course_rnaseq

Course material | Workshop on RNA-Seq

covid19

Analysis of Covid19

cyclone

cyclone

denovovalidation

Validating deNova assembled transcripts for chimeric transcripts

deseq2

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DESeq2.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DESeq2.

dicty-mirnas

Script and code to identify miRNAs in Dictyostelium discoideum

dmelanogaster_ucsctracks

fileparsers

Small programs for easy extraction of information from files.

general

hts-de-novo-transcript-pipeline

A pipeline for taking HTS sequence data from RNA seq and generating RNA transcripts

htstools

A mix of different tools created to handle down stream analysis

ing-simmons_et_al_dorsoventral_3d_genome

mirnaanalysis

Different scripts for analysing miRNA data

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

neurosporamethylation

Project to analyse methylation pattern in Neurospora

ngsintro-rnaseq

RNA-Seq course | Introduction to Bioinformatics using NGS data

ngspipeline_tools

Simple ngs processing pipeline

python_koans

Python Koans - Learn Python through TDD

repaper

Reproducing paper results with snakemakelib

revolution

Code concerning proper ASE analysis

rnaannotation

Scripts to properly annotate RNA

rnadenovoextension

rnamappingpipeline