aykhanyusifov Goto Github PK

2020-mrna_seq_workshop

Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.

adulthhanalysis

bp4rnaseq

An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and the accession code of RNA-seq samples deposited in the National Center for Biotechnology Information (NCBI). After a cup of tea or longer, you will get formatted gene expression data as gene count, transcript count and TPM values, etc.

gsea

htstream

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes

manuscriptrpackage

Zen and the Art of R Package Development: New York Open Statistical Programming Meetup, March 2

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

r4grads

Modules for MOLB5700, A course on fundamental skills for biomedical researchers

rfile_ay

rmd

this is Aykhan's homework for the r4grads class.

rnaseqlife

soc2020

2020 Wyoming INBRE Summer of Code

soc2020-1

University of Wyoming Summer of Code Workshop

test

r4gradsclass

tidycdisc

Demo the app here: https://nate884.shinyapps.io/tidyCDISC/

transcriptomeassemblytools

A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assemblies.