awfderry Goto Github PK

atom3d

Atomic tasks on molecules in three dimensions

awfderry.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

collapse

Representation learning for protein functional site analysis

collapse-motifs

examples

A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.

gensim-fork

Topic Modelling for Humans

minimal

Minimal is a Jekyll theme for GitHub Pages

ml-structure-bias

Code for "Protein structure determination method should be considered in the construction of machine learning datasets", published at the Pacific Symposium on Biocomputing 2022

parse

Protein Annotation by Residue-Specific Enrichment: a site-based statistical method for interpretable protein function annotation

pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

pdbtools

A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files