Atul Kakrana's Projects
Config files for my GitHub profile.
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Python SMART on FHIR client
ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission
Repository of scripts/pipelines for day-to-day and study-specific analyses
Machine Learning (Sci-Kit Learn), High-Performance Computing (Spark), Natural Language Processing (NLTK) and Cloud Computing (AWS)
Jekyll site template
Enhancing the BERT training with Semi-supervised Generative Adversarial Networks
AI for Human Diseases
Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
Suite for phased clusters discovery, comparison, annotation and to identify miRNA triggers - uses MapReduce model [In review]
Parallelized pipeline for pre-processing (Illumina) and quality assessment of sequencing libraries [Published]
Example scripts for HR and Recruiters - Job Search
miRNA-target prediction and PARE-seq based validation tool - uses MapReduce model [Published]