atranvan Goto Github PK

averageimage-onefolder-igor

averageimage_multifolder-igor

Igor procedure to make average image selecting files from multiple data folders

cascade

Calibrated inference of spiking from calcium ΔF/F data using deep networks

cellsort

This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort

covid_numbers

deeplabcut

Markerless tracking of user-defined features with deep learning

fastbook

The fastai book, published as Jupyter Notebooks

fissa

A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.

flowers_imageclassifier

Image classifier for a flower identification task using PyTorch

freehandlinescan-prairieview-matlab

Interface PrairieView/Matlab to extract coordinates of longest line from image

git-matlab-example

MATLAB exercise for np-crick Git meetup

gui-intro

Introduction examples for developing PyQt GUI applications

integrate-prefix-igor

Integrates all waves starting by a user-defined prefix

linescan-panel-igor

LineScan Panel utility for Igor pro

manim

Animation engine for explanatory math videos

ptgrey-cameras-with-python

These files explain how to use 'ptgrey' cameras with python. I felt the need to make this because there is not even an introductory code (to take a picture using ptgrey cameras) is available on internet. take_a_photo.py is the basic code people usually need but I have added links to a few possible helpful links.

serialport_playground

serialPortPlayground with C#

simple_pyspin

A Pythonic class-based wrapper for the FLIR PySpin Library

treadmill_and_picamera_python

First upload - Python code to record and trigger PiCamera and rotary encoder

visstim

wavelistto2d_igor

creates 2D wave from wave list

xmlfromvector-matlab