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behavenet

The Deep Learning models for the human activity recognition

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

caiman-matlab

Complete Matlab pipeline for large scale calcium imaging data analysis

cave

Calcium ActiVity Explorer - correlating calcium imaging with behaviour

cellreg

Registration of cells across sessions.

cellsort

This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort

cnmf_e

Constrained Nonnegative Matrix Factorization for microEndoscopic data

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

cubic-histvision

datasciencecoursera

datasharing

The Leek group guide to data sharing

dcgan-tensorflow

A tensorflow implementation of "Deep Convolutional Generative Adversarial Networks"

deeplabcut

Markerless pose estimation of user-defined features with deep learning for all animals, including humans

eztrack

gan

Matlab implementation of a Generative Adversarial Network

hardware

Printed circuit boards used in the NINScope

keras-gan

Keras implementations of Generative Adversarial Networks.

landscape_pipeline

registration pipeline for virtual multiplex imaging

matlab-gan

MATLAB implementations of Generative Adversarial Networks -- from GAN to Pixel2Pixel, CycleGAN

min1pipe

A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.

miniscope_analysis

MATLAB analysis functions for Miniscope project.

miniscope_cmos_imaging_sensor_pcb

Design, fabrication, and assembly files for CMOS imaging sensor PCB

miniscope_daq_software

Data acquisition source code for Miniscope project.

miniscope_v1.0

Miniature epifluorescence microscope for in vivo calcium imaging

miniscopeanalysis

Analysis package for miniscope data

miniscopy

A package to analyse calcium imaging data recorded with the Miniscope.

normcorre

Matlab routines for online non-rigid motion correction of calcium imaging data

openbabel

Open Babel is a chemical toolbox designed to speak the many languages of chemical data.

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

pytorch-gan

PyTorch implementations of Generative Adversarial Networks.