arushivyas Goto Github PK

airbnb_data_science_project

Airbnb Price/Availability Prediction

atkearney_capstone

chris_ui

UI for ChRIS

chris_ultron_backend

Backend for ChRIS

datasciencecoursera

Data Science sample repo for the Coursera Data Scetist's Toolbox Course

datasharing

The Leek group guide to data sharing - Forked Repository

interview

Headstorm's collaborative, pull-request based technical interview challenges.

list-of-projects

A list of all the projects that I've worked on at Boston Children's Hospital and their descriptions.

med2image

Converts medical images to more displayable formats, e.g. NIfTI to jpg.

mgz2imagetree

A python utility that walks through the inputdir and fetches mgz files of multiple subjects, uses mgz2imgslices to filter the labels and create labelled directories containing png/jpeg slices for each subject in the outputdir.

mgz2imgslices

A simple Python utility which converts mgz files to readable formats like PNG/JPEG, separately for each label defined within it.

mgz_converter_dataset

A small data set containing brain MRI images of .mgz type

pfdo

An application that provides the base functionality to use/demo the `pftree` callback usage.

pfdo_med2image

Perform a med2image at multiple locations in a directory tree

pfdo_mgz2image

Perform a mgz2imgslices at multiple locations in a directory tree

pfdo_run

pl-dsdircopy

A simple ChRIS 'ds' app that copies the contents of the `input` directory to an `output` directory.

pl-med2img

A ChRIS DS plugin to convert from medical image data files to display-friendly formats (like png and jpg).

pl-medcon

A DS plugin to convert NIfTI to DICOM

pl-mgz2imageslices

A ChRIS plugin to convert `mgz` to `png` or `jpeg` which will also be useful in other project workflows

pl-mricnn

A 3D U-Net effective for Brain MRI segmentation

pl-pfdo_med2img

A ChRIS plugin that can recursively walk down a directory tree and perform a 'med2image' on files in each directory (optionally filtered by some simple expression). Results of each operation are saved in output tree that preserves the input directory structure.

pl-pfdo_mgz2img

ChRIS plugin that runs ``mgz2image`` at each path/file location in an input tree. The CLI space is the union of ``pfdo`` and ``mgz2image``.

pl-pfdorun_imgmagick

A ChRIS plug-in which provides special utility to run "imagemagick" Linux CLI programs using the pfdo_run utility.

pl-pfdorun_mriconvert

An app to run the mri_convert program of freesurfer on an entire directory structure.

pyimgconvert

r_test_2

Testing repository on OH server