arunhpatil Goto Github PK

academic-kickstart

📝 Easily create a beautiful website using Academic, Hugo, and Netlify

arunhpatil.github.io

batchcor_tcgaisomir

Repository to reproduce analyses from "On the Impact of Batch Effect Correction in TCGA IsomiR Expression Data".

bioconda-recipes

Conda recipes for the bioconda channel.

brooklyn

Brooklyn plot for single cell/nuclei RNA sequencing data. This package enables a Pearson pairwise (ie., many to many) gene comparison and outputs co-expression patterns of genes across the genome. It generates a Brooklyn plot for visualization. More about this in the documentation below.

catgenex

CatGenEx - Categorization of Gene (based on) Expression

chartjs-plugin-stacked100

This plugin for Chart.js that makes your bar chart to 100% stacked bar chart.

cis-mqtl-mapping-protocol-for-methylome

clinicaltrials

Python scripts to parse XML files from ClinicalTrials.gov

cutadapt

Cutadapt removes adapter sequences from sequencing reads

datasciencecoursera

datasharing

The Leek group guide to data sharing

g3lollipop.js

Lollipop-diagram to visualize genomic mutations

g3viz

Lollipop-diagram to interactively visualize genetic mutations

genoart

GenoART: Genome Annotation and Refinement Tool

ghidra

Ghidra is a software reverse engineering (SRE) framework

googlescholar

Revised GoogleScholar-API from fredrike

googlescholar-api

gui

GUI accessories

hca_heart

This is the official repository for the Human Cell Atlas Heart project.

ibaq

Label free quantitation

incubator

Where all ideas and discussions happen to lead to new repositories

markdown-content

Markdown content for the www.aerobatic.io website

mirge

miRge - microRNA alignment software for small RNA-seq data, now at v2.0

mirge-1

mirge3_build

Enables building small-RNA libraries for organism of choice to use in miRge3.0 pipeline

mirgff3

GFF3 format with miRNA and isomiR information from sequencing data

mirglmm

mirna-eqtl-manuscript

mirtop

command lines tool to annotate miRNAs with a standard mirna/isomir naming