arunbodd Goto Github PK

followers: 7.0 following: 16.0 repos: 42.0 gists: 0.0

Name: Arun boddapati

Type: User

Company: Leidos

Bio: Bioinformatics Scientists with extensive experience in Transcriptomics (scRNA and Bulk), Metagenomics, Immunology and infectious diseases.

Location: Reston

Blog: https://arunbodd.github.io/

Hi there 👋

🔭 I’m currently working on Converting bash scripts to Nextflow pipelines
🌱 I’m currently learning how to approach multi-omics analysis using machine learning tools
📫 How to reach me: arunbodd at outlook (dot) com

Arun boddapati's Projects

aquascope

artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

arunbodd

arunbodd.github.io

The website showcases Arun Boddapati's professional portfolio, emphasizing his expertise as a bioinformatics scientist and machine learning expert.

bactopia

A flexible pipeline for complete analysis of bacterial genomes

boddapati_mkdocs

tutorial for scicomp on mkdocs/github actions

c-wap

SC2 variant detection and composition pipeline

cactus

Official home of genome aligner based upon notion of Cactus graphs

crispr_cas9_grna

gRNAs were designed for exonic regions of specific genes using certain specific conditions to increase specificity of spCAS9 (NAG and NGG) PAM sequences

csbb-v1.0

CSBB (Computational Suite for Bioinformaticians and Biologists) is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments.

ddseeker

A tool for processing Bio-Rad ddSEQ single cell RNA-seq data

donut_falls

Basic workflow for nanopore sequencing data

dryad-test

Dryad is a pipeline to construct reference free core-genome or SNP phylogenetic trees for examining prokaryote relatedness in outbreaks.

easybuild-nf

This is an internal pipeline for installing modules/softwares via easy build config files using parallelization of nextflow

ebola_hackthon

This Project is Co-developed with Rusher Sam (CDC)

grandeur-test

UPHL's Reference Free Pipeline

gtrap_websearch-tool

An informative and cumulative database for data related to protein synthesis involving (Gene, Transcription factors, Splicing, Post-translational Modifications, Proteins).