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cpecan-signal

C + python code for pairwise multiple sequence alignment, pulling out this functionality from the Cactus alignment program adapted to align signal-level information from ONT MinION

currennt

Modified fork of CURRENNT https://sourceforge.net/projects/currennt/

cytosinemethylationanalysis

Scripts and ipython notebooks for reproducing results from "Cytosine Methylation Variation Calling with MinION Nanopore Sequencing"

dcos-commons

dotfiles

settings and envs

go

The Open Source Data Science Masters

grass-demo

gssw

efficient alignment of strings to partially ordered string graphs

hdp_models

signalAlign hierarchical Dirichlet process models

helicase-reread-project

A repository for various models and scripts used in the Helicase Reread Project.

hiphase

Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

jobtree

Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-core machines.

kafka-actix-example

Classic wordcount, updated with async/await!

linfa

A Rust machine learning framework.

marginalign

UCSC Nanopore

marginphase

mesos-spark-integration-tests

Mesos Integration Tests on Docker/Ec2

na12878

Data and analysis for NA12878 genome on nanopore

nanonet

First generation RNN basecaller

noodles

Bioinformatics I/O libraries in Rust

pandas-cookbook

Recipes for using Python's pandas library

parcours

# Under Construction

poago

PO-MSA in #golang

pypore

Tools used to analyze data from nanopore-based experiments.

r3n

Recurrent neural network for nanopores

roughly

Smith-Waterman in Rust

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

servicecourse

Tiny lightweight python library for bioinformatics

signalalign

HMM-HDP models for MinION signal alignments

signalalign_notebook

Notes and scripts for signalAlign