arabidopsis-information-portal Goto Github PK

1001genomesvariants

JBrowse plugin enabling the ability to enrich the 1001 Genomes Variants track with metadata from 1001genomes.org Master Accession List API

adama

Adaptible Data And Microservices API

adama-cli

Python-based CLI for ADAMA platform

adama-example

A full example of Adama service

adama_example

Example of building an ADAMA service inside an iPython notebook

adamalib

A Python library for using Adama

agave-ncbi-blast

Agave and Docker build files for the back end of our BLAST app

agave-ncbi-blastdb

Handles creation of the BLAST database volume

aip-agave-apps

Collection of Agave-based computation apps that power the Araport site

aip-notebook-app

A General Purpose notebook app.

aip-science-apps-preview-1

Science app Homebox blocks for first preview release of Araport

aip_synonymresolver

Services for quickly resolving Arabidopsis gene name synonyms

aip_thalemine_webservices

Utility web services built atop Thalemine (and other mines) that conform to AIP data wrangling standards

apollo

Genome annotation editor, with a Java servlet backend and a Javascript client that runs in a web browser as a JBrowse plugin

apps-meyerslab

Dockerfiles and Agave support files for implementing web services versions of code from the Meyers lab

araport-agave-docs

Swagger spec for Araport Agave Core APIs

araport-agave-spec

Araport customizations to the Agave API Specification

araport-app.json-spec

araport-app.json specification

araport-blast-app

Araport BLAST+ science app.

araport-blast-drupal

Quick module for hosting the araport-blast-app

araport-contrib

Data files (and scripts used to generate these files) for the Araport Intermine, JBrowse and GBrowse2 installations

araport-data-api-cv

Araport Data API controlled vocabulary for parameter names

araport-file-browser-app

araport-portal

Docker image for the Araport portal.

araport-profile

Drupal Installation Profile for the Arabidopsis Information Portal

araport-prov

Design docs for ADAMA implementation of W3C PROV-DM

araport-theme

Arabadopsis Information Portal Theme, a Bootstrap 3 theme based on http://drupal.org/project/bootstrap.

araport_data_api_design

Design docs for Araport Data API Store

araport_features

Drupal modules developed for Araport functionality.

araportjbplugin

Custom JBrowse plugin to map JBrowse/Store/SeqFeature/REST to the Araport Adama API endpoints