Comments (1)
aortiza
commented on August 18, 2024
The current version of get_ice_trj relies on the order in which the colloids are originally written to the lmpdata file. We could change the order that they are written in, but it seems the easiest solution at this point is to re-match colloids and traps, like we do in experiments. To do this, we need a criterion to assign a colloid to a trap. In every possible case that I can think of, it would be enough to match to a trap the closest colloid to the trap at the first frame.
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Related Issues (12)
- Energy is in mysterious units.
- Give options to specify the padding of the region. Maybe even non square regions. HOT 1
- The ordered states of the honeycomb don't result in the correct states.
- Only periodic boundary conditions define "unit cell center".
- pint version HOT 1
- Null direction at the end of a simulation. HOT 1
- Add docstrings
- Vertex classification does not work properly in multitrap branch HOT 1
- 'progress_func' is not defined HOT 2
- Forces in the simulation documentation is not up to date. HOT 3
- Error for Periodic Boundary
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