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aioracle

biogpt

clinical-coding-pilot

Notebooks etc. for Clinical Coding Pilot

deidentify

The Deidentify app uses MedCAT to automatically redact or replace sensitive information in documents. Customisable rules and batch processing make it easy to handle large datasets.

digital-methods-text-mining

👩‍💻👾🐍Digital Methods for Analysing Texts

epilepsy-project

This repository contains my PhD work. Extracting and analyzing unstructured text from Electronic Health Records

git_tutorial

This is a basic tutorial for new users to play around with git

medcat

Medical Concept Annotation Tool

medcat_deidentification

A simple tool to remove identifiable information from electronic patient records

medcattrainer

A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.

medcattutorials

General tutorials for the setup and use of MedCAT.

medmentions

A corpus of Biomedical papers annotated with mentions of UMLS entities.

nn-learning

opengpt

A framework for creating grounded instruction based datasets and training conversational domain expert Large Language Models (LLMs).

privategpt

Interact privately with your documents using the power of GPT, 100% privately, no data leaks

working-with-medcattrainer-output

A simple repository containing tools for working with MedCATtrainer outputs.

working-with-snomed-ct

working_with_cogstack

Basic setup and easy to follow templates to interact and search CogStack