anna-parker Goto Github PK
Name: Anna (Anya) Parker
Type: User
Anna (Anya) Parker's Projects
augur
Pipeline components for real-time phylodynamic analysis
ml_treebuilder_review
Repository where I evaluate the performance of the ML Tree Builder PhyloFormer on simulated Influenza Data
mtksimulations
Repo for assessing the performance and accuracy of MultiTreeKnit
mtktools
This package contains methods for testing the accuracy of the MultiTreeKnit module of TreeKnit.jl
nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
tree-builder-prototype
This is a simple python prototype for a adding a local tree builder into nextclade, currently only using nucleotide values.
treealgs-fork
TreeAlgs fork for experimenting with ARG simulations
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