Comments (4)
Hi, @gsm2055!
Those files are not Microsoft Access Table files. In wfdb
format data files can have different extensions: mat
, dat
, etc. So you should read those files as usual with load(fmt='wfdb', ...)
method.
Please, refer to WFDB Guide for more information.
Regarding your second message: it is most likely that there is no element with index A00008
in batch
. Try printing batch.indices
, and use one of those indices in show_ecg
.
from cardio.
CardIO
uses wfdb library to read data in wfdb
format. You can use this library independently from CardIO
. Please, read the documentation and go through demo notebook. wfdb
has a built-in function to display signals.
Also, to display signal with CardIO
, you can refer to tutorials/III. Models.ipynb
, section CardIO segmentation models. First code chunk shows how to create EcgDataset
object with QT data. Then you can generate new batch and use load
and show_ecg
methods as usual.
from cardio.
i get this error
File "", line 4, in
batch_with_data.show_ecg('A00008', start=30, end=35)
File "D:\anaconda3\lib\site-packages\cardio-0.3.0-py3.7.egg\cardio\core\ecg_batch.py", line 390, in show_ecg
i = 0 if index is None else self.get_pos(None, "signal", index)
File "D:\anaconda3\lib\site-packages\cardio-0.3.0-py3.7.egg\cardio\batchflow\batch.py", line 334, in get_pos
pos = self.index.get_pos(index)
File "D:\anaconda3\lib\site-packages\cardio-0.3.0-py3.7.egg\cardio\batchflow\dsindex.py", line 148, in get_pos
pos = self._pos[index]
`import os
import sys
sys.path.append("..")
import cardio.batchflow as bf
from cardio import EcgBatch
from cardio.models.metrics import classification_report
import tensorflow as tf
index = bf.FilesIndex(path="C:/Users/gsm20/Downloads/TestData/A*.hea", no_ext=True, sort=True)
print(index.indices)
#%%
eds = bf.Dataset(index, batch_class=EcgBatch)
batch = eds.next_batch(batch_size=2)
batch_with_data = batch.load(fmt="wfdb", components=["signal", "meta"])
batch_with_data.show_ecg('A00008', start=30, end=35)`
from cardio.
from cardio.
Related Issues (20)
- I.CardIO.ipynb Error in line [6] HOT 2
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from cardio.