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zingale avatar zingale commented on September 21, 2024

we are going to need to modify each of the networks.

currently, they all take in X_k and return d(Y_k)/dt, and the Jacobian in terms of Y_k

We are going to convert these all to be in terms of X_k. If the net internally uses X_k, then we just take out any conversion to molar fractions.

If the net works with Y_k internally, then we will need to multiply dY/dt by A to get dX/dt. The Jacobian conversion is a little tricker, but can be seen in bs_jac.F90 as:

         do n = 1, nspec_evolve                                                                                  
             bs % burn_s % jac(n,:) = bs % burn_s % jac(n,:) * aion(n)                                            
             bs % burn_s % jac(:,n) = bs % burn_s % jac(:,n) * aionInv(n)                                         
          enddo                                                                 

from microphysics.

zingale avatar zingale commented on September 21, 2024

this work is being done on the nomolar branch

from microphysics.

zingale avatar zingale commented on September 21, 2024

actually... we can start by still having the networks return dY/dt, since in the *_rhs.f90 (for each integrator) we have a conversion like:

    if (.not. integrate_molar_fraction) then                                                                      

       burn_state % ydot(1:nspec_evolve) = burn_state % ydot(1:nspec_evolve) * aion(1:nspec_evolve)               

    endif                                                                                                         

from microphysics.

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