amcdavid Goto Github PK

amcdavid.github.io

Website derived from http://scotte.github.io/jekyll-clean

ammisc

Miscellaneous R functions mainly for interactive use

biobroom

Tidy up computational biology objects

bioc2023

bioccheck

biocintro

Course material for introductory R / Bioconductor courses

biostat-578

A repository for all of my teaching material

buildabiocworkshop

Template for building a bioconductor workshop package using github actions

cellarepertorium

Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

coordinatedmicrobiome

Analysis for "Neonatal gut and respiratory microbiota: coordinated development through time and space"

coordinatedtcellsmicrobiota

Code and data for "Aberrant newborn T cell and microbiota developmental trajectories predict respiratory compromise during infancy"

devtools

Tools to make an R developer's life easier

dropletutils

Clone of the Bioconductor repository for the DropletUtils package.

fasta-genomes-alignments-bioc

A short tutorial on using Bioconductor resources for genomic annotation, illustrated using SARS-CoV-2 sequencing

flowstats

flowStats: algorithms for flow cytometry data analysis using BioConductor tools

genesee

Core functions for genomics project templating

geneseebulk

Pipeline, analysis functions and markdown templates for bulk RNAseq

hackathon

Automated scoring of data contests using R and github

hackathon-432-2020

hackathon-summer-2020

Data and details for University of Rochester Biomedical Data Science Hackathon

hurdlenormal

Estimation and sampling for multi-dimensional Hurdle models on a Normal density with applications to single-cell co-expression

hw02-accidents

lab04-laquinta-dos

More spatial data wrangling and joins

lintmarkdown

Lint R and Rmd with default styles

madforjekyll.github.io

MAD4Jekyll theme for Jekyll

nr4a-ra-b-cells

Data, scripts and intermediate outputs supporting "Dynamic spectrum of ectopic lymphoid B cell activation in the RA synovium characterized by NR4A nuclear receptor expression"

nwac_tool

Shiny Script for R that parses and plots weather data from the Northwest Avalanche Center

parametric-t-sne

Running parametric t-SNE by Laurens Van Der Maaten with Octave and oct2py.

penultimategexcontainer

Penultimate gene expression container: An interface for interchange of gene expression data