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Ambuj Kumar's Projects

apop icon apop

Allostery pocket prediction

concat-1.0 icon concat-1.0

ConCat Master package: Automated alignment generation, concatenation and analysis program

concat-r icon concat-r

Fast alignment concatenation package in R.

diffexpr icon diffexpr

Porting DESeq2 and DEXSeq into python via rpy2

fetchseq icon fetchseq

Extracts high quality CDS sequence from NCBI.

miscellaneous icon miscellaneous

This repository contains several scripts for handling phylogeny data.

mutbase icon mutbase

mutbase - R package to analyze the pathological affect of genetic mutations

mutddg icon mutddg

Predict impact of point mutation on protein stability

primercheck icon primercheck

Map primer over the given input fastq and fasta files and creates annotation subsequently.

pymol-open-source icon pymol-open-source

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

treeconv icon treeconv

This Program takes bootstrap trees as input and generates a decision tree on the basis of unique bipartition's. The depth of tree tells us the convergence level of bootsrap run.

triples icon triples

Estimates accuracy of Coalescent methods and creates optimal tree topology by calculating the frequency distribution of unique triples topology from gene phylogeny trees

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