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blogs

Links to data science, bioinformatics, statistics, and machine learning resources

c3net

Allows inferring undirected gene networks with direct physical interactions from expression data.

chemprop

Message Passing Neural Networks for Molecule Property Prediction

dc3net

Inferring Condition-Specific Networks via Differential Network Inference

deep-learning-mhci

For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

depest

The software package provides several dependency score estimators that can be used in any Gene Network Inference Algorithms.

diffdock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

git-github

interpretable_ml_drug_discovery

Interpreting graph convolutional filters of target prediction network

lc3net

Integration of gene network infrence algorithm, c3net, with the literature information

ml-workshop

netmes

Network based performance measures with ensemble approach on the network level.

notes

packages

Packages in compressed format.