Allen Institute for Neural Dynamics's Projects
python driver to control MPDSnCxx AOTF devices
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
Repository to define jobs for common airflow workflows
Tools to analyze BCI data
Starter repository for behavior base primitives.
A template used for Bonsai projects
CodeOcean capsule to reproduce results for the ephys compression paper
Performs Temporal and Spatial Subsampling of Local Field Potential (LFP). Results have a zarr output per probe
Port of the lims2 eye-tracking pipeline - outputs annotated points and ellipse fits for eye-perimeter, pupil and corneal reflection.
Python wrapper around Code Ocean's REST API
Repository to facilitate interfacing with Code Ocean's index
Library to interface with AIND databases
React application to interact with Code Ocean's API to view registered data assets
A library that defines AIND data schema and validates JSON.
Data models used in aind-data-schema
Repository for data models used in aind-data-transfer-service
FastAPI service to run data compression and transfer jobs on the hpc
Library for basic data transformation requests such as compressing data or changing file formats
Library for uploading data from on premise machines to cloud buckets
Library of utility methods to facilitate file uploads, such as partitioning directories.
compute behavioral metrics and generate basic plottings for the dynamic foraging task
behavioral models for the dynamic foraging task