Comments (3)
Which modules have been difficult to get up and running? There is currently a single file, create_input_json.py, that is used to specify all of the custom file paths, but there may be some that we've overlooked.
from ecephys_spike_sorting.
Hi, concerning the pipenv issue for unexperienced Python users, you should make sure that you have these paths added:
set PATH=%PATH% ;C:\Users\name_user\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.7_qbz5n2kfra8p0\LocalCache\local-packages\Python37\Scripts
set PATH=%PATH%;C:\Users\name_user\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.7_qbz5n2kfra8p0\LocalCache\local-packages\Python37\Scripts
It would be helfpul if this is added to the documentation (or linked to the pipenv installation help)
from ecephys_spike_sorting.
It should be noted that these paths will depend on the specifics of your Python installation, and definitely won't work for everyone. If you installed the pipenv package following the instructions on this page but the pipenv
command still won't work, then it will likely be necessary to add the Python "scripts" directory to your system path (as in the example above).
On Windows we've always used Python that was installed using Anaconda/Miniconda, and in that case the pipenv
command was immediately accessible.
from ecephys_spike_sorting.
Related Issues (20)
- Error calculating d_prime HOT 1
- in KS2.5 channel_map.npy is now a row vector HOT 2
- Error running mean_waveforms module from curated kilosort output HOT 10
- Mean waveforms: Value error HOT 1
- kilosort post-processing module for KS3 data HOT 3
- Marshmallow Validation Error HOT 5
- build error on spike median subtraction module HOT 2
- Concatenating multiple runs HOT 4
- Postprocessing HOT 2
- "Files not available" on Quality Metrics module HOT 2
- raise InvalidGitRepositoryError HOT 2
- PCmetrics not being calculated for some clusters HOT 5
- PCmetrics values are not constant for multiple runs HOT 3
- Extracting NPX data recorded with Open Ephys on Linux HOT 2
- Questions regarding create_input_json.py setup HOT 1
- output json HOT 1
- Why are mean_waveforms worise by using the temp_wh.dat as row data than .bin file? HOT 2
- Executable for median subtraction for MacOS HOT 1
- mean waveforms linear regression error HOT 1
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