Related Issues (20)
- Prepare for scpca-nf release v0.7.3
- Make sure CellAssign is skipped for any objects with just 1 cell HOT 1
- [BUG] Age in sample_metadata is inconsistently typed HOT 3
- Discussion: Rename AnnData objects with .h5ad extension HOT 6
- [BUG] Account for grabbing estimated demux cell counts for libraries with no genetic demultiplexing HOT 1
- `project_celltype_metafile` parameter is missing from scpca-nf schema
- Test workflow with Bioc3.19 images HOT 1
- Use more specialized docker images for processes HOT 2
- Prepare for scpca-nf release `v0.8.1`
- Consider using nf-schema plugin to validate inputs
- Use new smaller images in processes HOT 1
- Test use of smaller Docker images in workflow HOT 1
- Re-order bulk metadata to match order for overall sample metadata HOT 1
- Add sample metadata table to QC and cell type reports HOT 5
- Output bulk data to a `bulk` folder rather than individual files within project directory HOT 1
- Prepare for scpca-nf release `v0.8.2` HOT 4
- Update AnnData output for improved scanpy compatibility HOT 2
- Prepare for scpca-nf release `v0.8.3`
- Skip creating merged objects if there are too many samples HOT 1
- Prepare for scpca-nf release `v0.8.4` HOT 1
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