Qi Song's Projects
My personal blog. Please visit https://alexqisong.github.io/
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
Condition Specific Regulatory Network Analysis
This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data
The web app for the query and visualization of predictions made by MTLRANK framework
Minimal example of a multilingual Jekyll website
Analysis srcipts for a book chapter
This repository demonstrates analyses presented in the manuscript
My own implementation of machine learning algorithm in python
:triangular_ruler: A flexible two-column Jekyll theme. Perfect for personal sites, blogs, and portfolios hosted on GitHub or your own server.
MTLRank is a multi-task learning based framework for inferring regulatory interactions from single cell data
NetZooC is a package of network methods written in C.
NetZooPy is a package of network methods written in Python.
This repository includes python functions for polyEN pipeline. Please use polyEN.py to perform model training and testing for age prediction.
Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq data. scSTEM is a GUI based tool and thus does not require any coding experience.
STEM java program called by scSTEM
This repository includes sample data for scSTEM
RNA Velocity generalized through dynamical modeling
[Code] Trace Norm Regularised Deep Multi-Task Learning