alexcorm Goto Github PK
Name: Alexandre Cormier
Type: User
Company: Ifremer
Bio: Bioinformatics engineer @SeBiMER
Twitter: AllanSSX
Location: Brest
Name: Alexandre Cormier
Type: User
Company: Ifremer
Bio: Bioinformatics engineer @SeBiMER
Twitter: AllanSSX
Location: Brest
Genome annotation with AUGUSTUS
Bioinformatics code libraries and scripts
A new algorithm for scaffolding
Singularity def file template for BRAKER
Developments in next generation sequencing: instruments, read lengths, throughput. See
Scripts and materials needed to reproduce results and figures in the instaGRAAL showcase paper
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
Galaxy Community Hub
Large genome reassembly based on Hi-C data. Continuation of GRAAL Software from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), and Marie-Nelly 2013, PhD thesis (https://www.theses.fr/2013PA066714)
Life ion torrent plugin using wisecondor
Ion Torrent plugin to etimate the proportion of circulating tumor DNA in blood samples
ThermoFisher Ion Torrent plugin to detect fetal trisomies and estimate fetal fraction
ThermoFisher Ion Torrent plugin to plot amplicon coverage
Mapping pipeline for data generated using Arima-HiC
A minimal Jekyll Theme to host your resume (CV)
SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genome-wide nucleosome profiles.
A novel scaffolding algorithm based on contig classification and optimization
Unfinished or one shot scripts
Visualize population genomics analyses results in R
A collection of Galaxy-related training material
WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using whole-genome data. NEWS: NOW INCLUDES AN INTERACTIVE RESULT BROWSER.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.