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3d-predictive-cellular-automata-

Computational Mathematics Sr. Seminar project. Cellular automaton to predict tumor growth. Comparable to a 3-d Conway's Game of Life.

alepidoptera7

README

assembly_scaffold_blast

Algorithm to parse, assemble and align genomic sequences by use machine learning techniques. The resulting sequences are used to form NCBI-BLAST respects and return sequence homologs.

crysalisgenetics

Data mining and search scripts, antisense oligonucleotide prediction for drug discovery.

crysalisgenetics-

Data mining for drug discovery scripts and functions.

fragmentation_digester

Fragmentation API

gans-

Generative Adversarial Network Scripts

global_alignment_prediction

Machine learning methods for global alignment prediction by use of fourmer frequiencies and path traversal techniques.

k-means-to-blast-

Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.

missingmotif

Determines the most probable sequences missing from a greater set of genomic reads.

mtreptile-

Files pertaining to the processing of NGS data in .fasta.gz format for the purposes of identifying the genomic sequences which belong to either of the tuataras dual mitochondrial genomes.

proxy-cleave-backend-with-gui

pCleave backend

ssdna-aptamer-prediction-

BMEB Thesis project which develops ssDNA aptamer sequences from probabilistic data per provided protein epitope.

tuatara_nanopore

Scripts written to operate on tuatara nanopore data for Profile Genomics.

various-algorithms-for-profile-genomics