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ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
An ADAM extension library for loading .vcf files annotated with SnpEff and SnpSift.
ENCODE ATAC-seq pipeline
A Variant Caller, Distributed. Apache 2 licensed.
Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputation of epigenomic experiments that have not yet been performed.
http://bam.iobio.io
Conversions to and from Big Data Genomics Avro Formats. Apache 2 licensed.
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
Conda recipes for the bioconda channel.
Big Data Genomics ADAM Pipe API wrappers for bioinformatics tools. Apache 2 licensed.
Code for the ICML 2019 paper 'Conditioning by adaptive sampling for robust design'
CompBio Skills Seminar
Image and VM management for Jenkins, Spark and Mesos clusters in EC2
Fast proteasomal cleavage detection. Apache-licensed.
Convolutional Kernel Machines
Building reproducible software packages with Python, pip, and conda
Open-source bioinformatics components for Dash
Raw files for use in the Dash Bio documentation.
:book: The Official Dash Userguide & Documentation
Open-source demos hosted on Dash Gallery
Differential gene expression analysis based on the negative binomial distribution
Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility
ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed in their RNA seq data.
A tool for Finding Interesting variants that modify regulatory Grammar.
Models and APIs for Genomic data. RETIRED 2018-01-24
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.