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Anders Gorm Pedersen's Projects

anclib icon anclib

Python library for analyzing ancestral reconstructions of sequences on phylogenies

bmagwa icon bmagwa

Bayesian variable selection and model averaging in genome-wide association analysis

evolintro icon evolintro

Lecture notes. Brief introduction to evolutionary theory

greedysub icon greedysub

Reduce redundancy in dataset using greedy algorithms: select subset of data such that no items are closely related

herv_bayesian_analyses icon herv_bayesian_analyses

Scripts and data for Bayesian analyses in HERV paper ("Human endogenous retroviruses form a reservoir of T cell targets in hematological cancers with low mutational burden")

hobohm icon hobohm

[DEPRECATED: use greedysub instead] Select representative, non-redundant data set from larger set, based on list of pairwise similarities (or distances).

phylotreelib icon phylotreelib

Library for analyzing and manipulating phylogenetic trees

seqconverter icon seqconverter

Command-line program for reading, writing, analyzing, and manipulating sequence files

sequencelib icon sequencelib

Library for analyzing and manipulating DNA and protein sequences

sumt icon sumt

Computes consensus trees and other phylogenetic tree summaries

treedist icon treedist

Computes measures of (dis)similarity between phylogenetic trees. Provides summaries of shared and unique bipartitions.

treetool icon treetool

Command line program for manipulating and analyzing phylogenetic trees

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