aghaeifar Goto Github PK
Name: Ali Aghaeifar
Type: User
Company: Max Planck Institute for Biological Cybernetics
Twitter: AAghaeifar_MRI
Location: Tübingen
Ali Aghaeifar's Projects
aghaeifar.github.io
amash
Advacned Magnetic field Shimming
bet2
MATLAB mex interface and Python wrapper for standalone Brain Extraction Tool (bet2),
biot-savart
Simulation of Biot-Savart law - Analytical solution to calculate magnetic field of an arbitrarily shaped coil. MATLAB and Python interface are provided.
optimized_multi_coil
Optimization of multi-coil shim setup for human brain shimming. Please cite our paper if you used the code and found it useful: https://doi.org/10.1002/mrm.27929.
recomrd
Python scripts to read and reconstruct ismrmrd (mrd) format
recotwix
scripts for reconstruction of MRI data from Siemens rawdata files (twix)
spinwalk
SpinWalk, a framework for Monte-Carlo simulation to model spins random walk within a microvascular network. SpinWalk can be also employed to simulate diffusion in a microstructure substrates.
turbobloch
Implementation of Bloch equation simulator for magnetic resonance imaging (MRI) sequences
twixtools
python file reader/writer for Siemens MRI raw data + compression utility
vini
viewer for MRI data & numpy arrays
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