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cancer-staging-detection-with-transfer-learning-senior-thesis-'s Introduction

Cancer Metastasis using CNNs and transfer learning

Links

Link to dataset: https://www.kaggle.com/c/histopathologic-cancer-detection/overview

Dataset is also available at:

cluster.cs.earlham.edu:/eccs/home/afarah18/488/markIII/histopathologic-cancer-detection

Link to Paper: https://portfolios.cs.earlham.edu/wp-content/uploads/2021/03/paper488.pdf

Link to Video: https://www.youtube.com/watch?v=G01y0ZLKST4

Link to Poster: https://portfolios.cs.earlham.edu/wp-content/uploads/2021/03/poster.pdf

Software architecture diagram

Software architecture diagram

Files

basicCNN.py -> This file includes code for training a model with randomly initilized weights and biases

VGGCNN.py -> This file includes code for training a VGG model with ImageNet transfer learning

VGGLessData.py -> This file includes code for training VGG with transfer learning with half of the dataset

validate.py -> This file includes code for evaluating the results of the three models

How to use

After installing the dependencies each file can be run simply by using:

python3 <filename>

Naturally validation file has to be run after all three models have been trained and saved as .h5 files.

List of dependencies

  • NumPy
  • Pandas
  • TensorFlow
  • Keras
  • MatplotLib

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