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activation_of_transcription

ChEC and ChIP data of gcn4, Pol2 and Mediator to formulate a model of activation of transcription

adpred

A tool for prediction of Transcription Activation Domains from protein sequences.

adpred-app

App to predict Activation Domains

adpred-new-website

adpred_dashboard

adpred_publication

scripts and notebook for publication of ADpred

baldr

bioconda-recipes

Conda recipes for the bioconda channel.

bowtie2

A fast and sensitive gapped read aligner

cheatsheets-ai

Essential Cheat Sheets for deep learning and machine learning researchers

conda-recipes

build and test recipes for conda

cookbook-2nd

IPython Cookbook, Second Edition, by Cyrille Rossant, Packt Publishing 2018

damage-estimator

Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such as transposon based methods and Ultra II FS library preparation from NEB).

dash-bio

Open-source bioinformatics components for Dash

dashboards

Jupyter Dashboards Layout Extension

eager

A fully reproducible and state of the art ancient DNA analysis pipeline

fgbio

Tools for working with genomic and high throughput sequencing data.

galaxy

Data intensive science for everyone.

galaxy_blast

Galaxy wrappers for NCBI BLAST+ and related BLAST tools.

gcn4_chec

gibbs-sampler-motif-finding

Gibbs sampler for finding motif in DNA sequence

goenrich

GO enrichment with python -- pandas meets networkx

hot-bikes

Divvy bike data is so hot right now, unlike this cultural reference

igblast-parser

Simple parser of igblast results into a csv table

interactive-tutorials

Interactive Tutorials

intro-to-rnaseq-hpc-o2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

intro-to-vue-3

Code for Vue Mastery's Intro to Vue 3 course:

jsondiscoverer

JSON model discoverer

kit-comparison

Comparison of two kits for mRNA purification

lava-dna

Fork from code.google.com/p/lava-dna