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Adebayo Braimah's Projects

anat_seg icon anat_seg

Segment anatomical brain MR images for neonates, pediatric, and adult populations

cifti_pearson_correlation icon cifti_pearson_correlation

Extracts the mean timeseries from CIFTI-2 files and computes the Pearson correlation between two different masks

cifti_roi icon cifti_roi

Finds ROI overlap with CIFTI (TFCE) stats cluster *.dscalar.nii file

commandio icon commandio

Python package that logs and executes commands for the command line

convert_source icon convert_source

Convert source DICOM, PAR REC or NIFTI image data to BIDS directory layout

cse505 icon cse505

Stony Brook CSE505 project repository

deepsea icon deepsea

Automatic 3D whole breast segmentation in breast MRI

dotfiles icon dotfiles

Configuration files for linux and OS X platforms.

dual_regression_cifti icon dual_regression_cifti

Performs FSL's dual_regression for cifti files and performs cross subject statistical modeling with TFCE

dwi_preprocessing icon dwi_preprocessing

A Set of Scripts Dedicated to Diffusion Weighted Image Preprocessing and Quality Control

ev_to_bids icon ev_to_bids

Converts FSL custom 3-column EVs to BIDS formatted TSV

fix.dof icon fix.dof

Computes temporal degrees of freedom (tDOF) from ICA-based clean-up methods

img_dir_walk icon img_dir_walk

Walks through some image parent directory and returns child directory paths of medical image containing directories

loss-landscapes icon loss-landscapes

Approximating neural network loss landscapes in low-dimensional parameter subspaces for PyTorch

mk_design icon mk_design

Creates a design matrix that is FSL compatible

nifti_roi icon nifti_roi

Finds clusters in a NIFTI volume and prints ROIs that are overlapped with each cluster

nrrd2nii icon nrrd2nii

Command line tool designed to convert nrrd (or nrrd header and image) files to NIFTI-1 images

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