Name: Adam Youlin He
Type: User
Company: @Danko-Lab
Bio: PhD candidate in @Danko-Lab at Cornell. Transcriptional regulation, machine learning, population genetics
Twitter: missing_a_rib
Computational biologist interested in applications of machine learning to transcriptional regulation, variant effect prediction, and population genetics.
Currently a PhD candidate in the Danko lab at Cornell University
adamyhe
borzoi_qtls
Curated QTLs used in the Borzoi paper.
bpnet-lite
This repository hosts a minimal version of a Python API for BPNet.
deepexplain
A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability
dreg
Detecting Regulatory Elements using GRO-seq and PRO-seq
element_core_promoter_pwms
More accessible dump of the PWMs from ElemeNT (10.1080/21541264.2015.1067286)
enformer-pytorch
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
exp-model-fit
Example code for fitting the ExP model from Bergman et al. 2022
learningx
Deep & Classical Reinforcement Learning + Machine Learning Examples in Python
mac-dev-playbook
Mac setup and configuration via Ansible.
nascent_rna_models
Repository for modeling PRO-cap data with BPNet.
persona5_calculator
A tool to help calculate fusions in Persona 5.
proseq2.0
Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing
tangermeme
Biological sequence analysis for the modern age.
tfmodisco-lite
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
ukbb_parser
A Python module for loading phenotypic and genetic data from the UK Biobank.
webinars
Training material based on webinar events
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
