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mt_sat

qMRPullseq for qMRLab module `mt_sat`.

multib1_fit_z-cw_2pool

Quantification of CEST effects by simultaneous fit of Z-spectra acquired at multiple B1

multiband-rf

Code to design Multiband RF pulses

multiband-rf-pulse-design

A framework for designing RF pulse with multiband magnitude profile, arbitrary phase profile and generalized flip angle, using convex optimization. Spectral sparsity was exploited to further optimize pulse performance, such as minimizing pulse duration, transition width and total energy with flexible trade-off.

multiscalebrainparcellator

Multi-Scale Brain Parcellator, part of the Connectome Mapping Toolkit (CMTK), is a BIDS App that implements a full anatomical MRI processing pipeline, from raw T1w data to structural brain parcellation at five different scales.

mwi

Codes for GRE-based Myelin Water Imaging (MWI)

myocardial-t1-mapping

Model-based myocardial T1 mapping

neuroimaging

Neuroimaging

nifti_matlab

Matlab for NIFTI support

niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)

noise_mri

Educational content about noise in MRI

noncrtgrappa

A generalized GRAPPA algorithm that works for arbitrary (non-Cartesian) readout trajectories

now

NOW - Numerical Optimization of gradient Waveforms

nufft_comparison

octopus

Off-resonance Correction OPen soUrce Software

open-source-pulse-design

RF Pulse Design with SigPy.RF tutorial

optimal-control-epg

Optimal Control Design of Fast Multi-Echo Sequences with Applications to Parallel-Transmit Systems

parametricmultisubjectfmri

Scripts for SPM, FSL and AFNI used for investigating the validity of parametric statistics for multi-subject fMRI.

partial_volume_correction

This repository moved to the following address:

pca_denoising

The PCA denoising matlab algorithm used in the publication "Principal component analysis for fast and model-free denoising of multi b-value diffusion-weighted MR images" by Oliver J Gurney-Champion et al. in physics in medicine and biology in 2019.

phantomas

Create realistic digital phantoms in diffusion MRI.

phardi

PHARDI

phaseunwrapping_book

A Jupyter Book that contains figures for the Phase-unwrapping research paper (figures in Julia). First author Nan-kuei Chen and second author Pei-Hsin Wu, report a new postprocessing procedure that uses Fourier‐domain data analyses to improve the accuracy and reliability of phase unwrapping for MRI data of low SNR.

physics-recon

physics-based MRI reconstruction

plof

This toolbox contains demo for polynomial and Lorentzian line-shape fitting (PLOF)

pulse_sequences

Collection of vendor-neutral & open-source pulse sequences developed in RTHawk for qMRI.

pulseq

Open source framework for pulse sequences

pulseq3dute

Pulseq implementation of MRI 3D UTE sequence

pulsesequencediagrams

Matlab code to generate MR pulse sequence diagrams

pydcemri

Python module for processing dynamic contrast enhanced magnetic resonance imaging (DCE-MRI) data