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ivim-dki-mrmp2021

A package providing MATLAB programming tools for IVIM-DKI analysis with total variation (TV) penalty function.

ivim-toolbox

This toolbox is dedicated to model fitting and simulation for Intra-Voxel Incoherent Motion (IVIM) MR imaging. It gathers scripts, on the one hand, to fit IVIM bi-exponential signal representation voxel-wise and, on the other hand, to run Monte Carlo simulations in order to assess the estimation error on parameters as well as the minimum required SNR to get accurate estimation.

ivim_tools

scripts and data for studying intravoxel incoherent motion with flow compensated diffusion gradients

ivim_tools-1

Matlab tools for intravoxel incoherent motion (IVIM) data, including kurtosis, stretched exponential, tri-exponential, mono-exponential and segmented fits in Matlab

jemris

JEMRIS is a versatile, open-source, multi-purpose MRI simulator.

joint_reconstruction_synthetic_mr

knee_cartilage_thickness

Matlab files for calculating knee cartilage thicknesses.

kt-dynamic-mri-reconstruction

[MICCAI'19] k-t NEXT: Dynamic MR Image Reconstruction Exploiting Spatio-Temporal Correlations

ktrecon

Reconstruct dynamic k-t under-sampled MR data using ReconFrame

large_dyn_range_rel_b1_mapping

magneticrelaxometry

mati

MATI (Microstructural Analysis of Tissues by Imaging)

matlabfastfittoolbox

This stores MATLAB code that fits stretched exponential functions using built-in methods and genetic algorithms. I would like to also build in Gaussian fitting. This is meant for experimental data, specifically optically switching transmission data from glass.

matrixuser

A lightweight GUI-based program for multi-dimensional data processing and analysis

mb

Support for CMRR multi-band pulse sequences

mcdespot

Code to simulate mcDESPOT parameter estimation and investigate search-space degeneracy. Key scripts: search-space sampling is performed using "mcDESPOT_SP.m" and Monte Carlo simulations are performed using "mcDESPOT_MC.m".

md-dmri

MATLAB code for Multidimensional Diffusion MRI

md-dmri-data

Example data to be processed with the md-dmri framework

mdt

Microstructure Diffusion Toolbox

medical-image-analysis

Detection and segmentation of the Left Ventricle in Cardiac MRI using Deep Learning and Deformable models

mingw

mitk-diffusion

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

mlsvd-cest

mocogui

An MR Motion Correction toolbox for registration and evaluation

monai

AI Toolkit for Healthcare Imaging

mp2rage

SPM implementation of https://github.com/JosePMarques/MP2RAGE-related-scripts

mp2rage-1

Function which computes T1 from mp2rage

mp2rage-related-scripts

MP2RAGE Scripts - T1 map correction & Background noise removal

mp2rage_correction

BIDS App for correction of residual B1 in MP2RAGE based on Sa2RAGE (code from JP Marques)

mrf

An end to end, vendor neutral MRF package