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spades-core: /opt/conda/conda-bld/spades_1664217775513/work/src/project/spades/main.cpp:101: int main(int, char**): Assertion `cfg::get().K >= runtime_k::MIN_K && cfg::get().K < runtime_k::MAX_K' failed.finished abnormally, OS return value: -6 about spades HOT 2 OPEN

GuillaumeDore11 avatar GuillaumeDore11 commented on August 23, 2024 1
spades-core: /opt/conda/conda-bld/spades_1664217775513/work/src/project/spades/main.cpp:101: int main(int, char**): Assertion `cfg::get().K >= runtime_k::MIN_K && cfg::get().K < runtime_k::MAX_K' failed.finished abnormally, OS return value: -6

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Comments (2)

andrewprzh avatar andrewprzh commented on August 23, 2024 1

Dear @GuillaumeDore11

This looks quite odd, since 127 is the maximal possible value and there are multiple checks for that.
Is it possible you SPAdes version was modified by someone?

Meanwhile, I suggest setting K-mer size manually -k 55,127.

Best
Andrey

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GuillaumeDore11 avatar GuillaumeDore11 commented on August 23, 2024 1

Hi @andrewprzh,
Thanks for the answer.
I thought that the kmer size limit had been increased in a latest update. If that's not the case I don't quite understand why it has been able to set a value > 127. I just installed with conda and didn't modified it. Guess, I will use -k 55, 127.
Thanks again.

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