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ann2sql

Script to iterate over rows in a SQL database, annotate with MedCATservice, and store in a destination database.

clicosta

National Clinical Coding Standardiser

d-cog

cOG Annotation of protein sequences using deep learning

deep-annot

deepseq2vec-repo

Repositories for the DeepSeq2Vec web portal

dimedb

DIMEdb: Metabolite identification web service.

dimedb-lts

Long Term Support version of the DIMEdb Metabolite identification web service.

dimedbpy

Python wrapper for the DIMEdb REST API.

dimepy

Python package for the high-throughput nontargeted metabolite fingerprinting of nominal mass direct injection mass spectrometry directly from mzML files.

icd10-cm-ng

ICD-10 CM medical classification list by the World Health Organization

icd9-to-snomedct

Shell script to create TTL file of annotations to augment an existing ICD9 triple graph to point to SNOMEDCT concepts.

limbus

LImBuS is an open source, standards compliant Biobank Information Management System developed by researchers from Aberystwyth University.

limbus-ova

Repostiory Containing the Open Virtualisation Appliance for various releases of LImBuS

limbus-qrtk

An extremely simplistic QR/DataMatrix/Barcode toolkit for the LImBuS project.

matilda

medialpy

A small python package that allows the user to look up common medical abbreviations.

mimic-iii-to-snomed

Preprocessed SNOMED relations files that connect drugs and diagnoses from MIMIC-III to SNOMED. Fork of cscihkbu/Snomed-Proprocessed.

n2c22018t12sql

Tool for importing n2c2 2018 Track 1 "Cohort Selection for Clinical Trials" data into SQL

pyisopach

A "fairly fast" ISOtope PAttern Calculator for Python

pymean

A Python package for metabolite enrichment analysis.

scttsrapy

A Python Interface to the SNOMED CT Snowstorm API

sog

Simple Ontology Grep - A REST service for searching near-matches in ontology labels