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abarbour avatar abarbour commented on July 17, 2024

Yes it is. Recently (9ec9d84) @jkennel expanded the code to do just this while maintaining computational efficiently. I haven't yet had the time to issue a formal release to CRAN, but will do so soon(ish). In the meantime I encourage you to test out what has been added with the development version:

library(remotes)
install_github('abarbour/psd')

Here's a silly example:

library(psd)
set.seed(1113)
n <- 1000
inp <- rnorm(n) # represents the 'input' to the system
resp <- inp + runif(n) # represents the 'response' of the system
io <- cbind(inp, resp)

p <- pspectrum(io)

# Because io is a multi-dimensional array, 'p' should contain coherence, admittance and phase 

layout(matrix(1:3,1))
with(p,{
  plot(freq, coh, ylim=c(0,1), type='l', main='Coherence')
  plot(freq, Mod(transfer), ylim=c(0,1), type='l', main='Admittance (Gain)')
  plot(freq, phase, ylim=pi*c(-1,1), type='l', main='Phase')
})

from psd.

gmgeorg avatar gmgeorg commented on July 17, 2024

Are you planning on releasing this version to CRAN anytime soon?

background: I am the author of the ForeCA package, which relies heavily on multivariate (cross) spectral density estimation. I have relied previously on the sapa R package, but unfortunately ifultools package -- and thus sapa -- have been removed from CRAN recently. While looking for a good alternative for the excellent sapa::SDF() I came across psd and this issue in particular. I tried the test code above with the dev version here (1.2.1) and it does exactly what I need for ForeCA (return a 3D complex-valued array with the multivariate cross-spectrum).

from psd.

abarbour avatar abarbour commented on July 17, 2024

from psd.

gmgeorg avatar gmgeorg commented on July 17, 2024

Apparently my grace period ended earlier, so it has been removed already last week (despite ifultools having fixed the issues; its just that the maintainer handover on their side was not handled in time I think, hence CRAN removed it).

the current ForeCA version on github works w/o SDF by just using astsa package; but it seems that psd would be a closer/better replacement of sapa::SDF so I was checking in if I should release the ForeCA update now, or just wait if psd is getting on CRAN anytime soon.

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abarbour avatar abarbour commented on July 17, 2024

from psd.

abarbour avatar abarbour commented on July 17, 2024

Version 2.0 is on CRAN now (https://cran.r-project.org/package=psd). Note that the capabilities are all there, but in the interest of expedience (e.g., to meet the 'kitagawa' package deadline), we released it with with a few known issues that need to be taken care of. These are all minor ones related to methods like plot, as.data.frame, etc, as well as some documentation. So look out for minor version bumps soon. Regardless, comments and issues welcome!

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