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aamcgenomics

Config files for my GitHub profile.

baltic

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

earlysars2inpanama

Data repository for code and metadata of SARS2-CoV-2 early spread in Panama.

gencom

Script for generation of a consensus genome annotation and associated plots

gencomvariable

Script for generation of consensus from reference (mapping) using several tools

hivminion

Pipeline for the analysis of HIV amplicons with MinION sequencing

nf-genomics-ont

a newbie repository for analyzing ONT reads over hyperstorm cluster

pango-designation

Repository for suggesting new lineages that should be added to the current scheme

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

sars-cov-2_guangdong_genomic_epidemiology

Data used for analyses in "Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China" (Lu et al., Cell, 2020) https://doi.org/10.1016/j.cell.2020.04.023

sars2viz

supromnscript

wf-metagenomics

Metagenomic classification of long-read sequencing data modifications test