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Alan's Projects

buckets-js icon buckets-js

A complete, fully tested and documented data structure library written in pure JavaScript.

cutadapt icon cutadapt

cutadapt removes adapter sequences from sequencing reads

ete icon ete

ETE (Environment for Tree Exploration) is a python toolkit intended for tree analysis and visualization. It provides both a comprehensive API to manipulate and operate with trees in a programmatic way, as well as a number of command line tools to easily compare, annotate, modify or render tree images. ETE is currently developed as a research tool in the context of genomics and phylogenetics, providing several specific modules for orthology and paralogy prediction, NCBI taxonomy queries, multiple sequence alignment integration and more.

leaflet.label icon leaflet.label

Leaflet.label is plugin for adding labels to markers & shapes on leaflet powered maps.

numeral-js icon numeral-js

A javascript library for formatting and manipulating numbers.

seqtk icon seqtk

Toolkit for processing sequences in FASTA/Q formats

sickle icon sickle

Windowed Adaptive Trimming for fastq files using quality

swarm icon swarm

A robust and fast clustering method for amplicon-based studies

wasabi icon wasabi

Wasabi is a web-based tool for evolutionary sequence analysis. Homepage: http://wasabiapp.org

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