Comments (3)
Hi David - thanks for the pointers. I'll take a look and come back to you.
-AHB
from dadasnake.
Thanks for the introduction here @dlaehnemann.
The wrappers I contributed to were initially meant for my small scale use and the workflow I gave a thought is far from being as advanced and mature as what you @a-h-b did with dadasnake. So don't take any offense from this minor alternative I suggested :)
If you plan to follow up on David and Jan's ideas, I might be available for some contribution, if you want you could notify me.
Best,
Charlie
from dadasnake.
Hi Charlie - I really appreciate the idea of using the dada2 wrappers. It's how snakemake is intended, so it's definitely a great idea. I'll take a look at your wrappers as well as some of the other tools' and keep you in the loop for further developments :-) - AHB
from dadasnake.
Related Issues (20)
- VARIABLE_CONFIG? HOT 2
- Test run fail HOT 2
- submitting to cluster not working HOT 6
- Feature request / general question re: parameter sweeps for DADA2 HOT 1
- multiple primer sets HOT 3
- Nanopore data HOT 7
- Multiple cores when using option -l HOT 1
- Visualize DAG HOT 5
- complaining about GB locale HOT 10
- mothur database issue HOT 2
- error: "Could not create conda environment from ... " HOT 6
- Runtime of 120 hours in some rules HOT 1
- install instructions using cluster snakemake module HOT 1
- Initializing dada2_env.yml failed HOT 1
- WorkflowError: File reporting/primerNumbers_perLibrary.tsv marked for report but does not exist. HOT 7
- Failed "optional test run" - Step 7 of Install HOT 4
- NCBI BLAST nt database configuration with dadasnake: Example config.yaml files for use with BLAST HOT 2
- ITSxpress support HOT 1
- Error in rule picrust2 HOT 3
- Question on representative sequences HOT 2
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