tclamnidis Goto Github PK
Name: Thiseas C. Lamnidis
Type: User
Company: Max Planck Institute for Evolutionary Anthropology
Location: Leipzig, Germany
Name: Thiseas C. Lamnidis
Type: User
Company: Max Planck Institute for Evolutionary Anthropology
Location: Leipzig, Germany
Tools test whether admixture occurred and more
An R script to generate plots for ADMIXTURE runs, for multiple K values.
A basic Bash tutorial by @jfy133, @aidaanva and @TCLamnidis.
a test for binder setup
Conda recipes for the bioconda channel.
This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis, with a particular emphasis on population genetics.
A simple python script to contaminate Eigenstrat genotypes.
Contamination estimation from mitochondrial ancient DNA
a nextflow pipeline to run Contammix and all the necessary preprocessing for it.
Personal setup for various programs.
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
An R package to assist in reading of nf-core/eager results into R objects.
A set of tools to compare and manipulate the contents of EingenStrat databases, and to calculate SNP coverage statistics in such databases.
EM-PCA for Ultra-low Coverage Sequencing Data
Scripts to assist with data upload to the ena
Introduction to Ancient Metagenomics Book
This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.
Package recipes for processing through the Minotaur workflow
Repository to host tool-specific module files for the Nextflow DSL2 community!
Aggregate results from bioinformatics analyses across many samples into a single report.
Test data for MultiQC. See https://github.com/ewels/MultiQC
Config files used to define parameters specific to compute environments at different Institutions
Website for the PAASTA Community
A small python tool to calculate pairwise mismatch rate between all individuals in an EigenStrat dataset.
A simple package to read in eager results.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.