Rohit Satyam's Projects
Another Gff Analysis Toolkit
A curated list of Best Artificial Intelligence Resources
collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)
The example codes discussed in the course are available here.
This repository contains assignment submission for coursework
BioC2020: Where Software and Biology Connect
A Hugo theme built using Yahoo's Pure CSS
A place for all of my blog related code.
Introduction
Contribute Packages to Bioconductor
## Processed data for covidium
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
collection of links on how to create R packages
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
Bash program for DNA sequence to binary format translation
This is a repository of various scripts and meta-scripts that could be written in bash and python programming languages, which could help to run protocols involved in docking and virtual screening. Pricipally tested for use on ubuntu 16. I could be updating the repository gradually! If you have any questions or doubts, please send me an email to [email protected]
Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
Automatically exported from code.google.com/p/ea-utils
V20190112
Seamless navigation through combined results of set-based and network-based enrichment analysis
R Interface to Ensembl Variant Effect Predictor
Bash script for promoter sequences extraction
Converts a GenBank file (*.gbk) to an NCBI Protein Table (*.ptt) file
MetaAnalysis for High Throughput Experiments
Graphics related functions for Bioconductor
Representation and manipulation of short genomic alignments