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bibliotools

A small suite of bibliography tools designed to be used in IDLE

bio_adapt

A collection of miscellaneous bioinformatics adaptor tools which mainly serve as bridges between various databases and software programs.

bioseq_consensus

A library for generating consensus sequences.

deque

A crude Deque implementation for some personal projects.

ecsass_parser

A parser module in Python for working with genetic sequences using the Ebert-Chan Sequence Assembly Syntax System.

file_reader

A series of general and bioinformatics plaintext file readers which make file IO operations more convenient for those file types.

file_writer

join_tables

Join two table files to produce a new table file.

nseq_match

A library of functions for comparing and querying nucleotide sequences.

phred_library

A simple library containing code useful for working with Phred values.

python_command_line_tools

A library of generally useful code for working with command line compatible code.

sort_reads_by_r2_barcode

A simple tool for sorting next-gen sequencing reads (FASTQ format) by the presence/absence of a specified barcode at the start of the R2 reads.

synthetic_in_silico_genome_generator

A library for generating and modifying genomes for the purposes of testing Bioinformatics software and methods.

table_to_table

Generic tool for processing data in table files. Capable of selecting and rearranging columns and doing basic filtering.