Name: Tamal Batabyal
Type: User
Company: https://sites.google.com/view/tamal-batabyal
Bio: Postdoctoral Research Associate,
Department of Neurology
University of Virginia
Advisor: Jaideep Kapur , MD, PhD
Location: Charlottesville, VA, USA
Tamal Batabyal's Projects
Tamal's website
Cellcounter localizes neuron cell bodies in a stained slice of rodent brain. It includes stain-specific configurations of Cellcounter.
Closed loop optogenetics for online seizure interruption; Fully convolutional neural network regressor; fast and flexible light pulse delivery
This work proposed a shallow network with CNN layers to classify patients whether they have coronary heart disease or not based on their clinical and demographic attributes.
Discrete point based trend estimation algorithm, effective for investigating large-scale group behavior, such as sinkhole formation and its growth.
Morphological categorization of neurons in order to explore their functional features has drawn significant attention over past few decades. The enormous complexity in the structure of neurons poses a real challenge in the identification and analysis of similar and dissimilar neuronal cells. Existing methodologies often carry out strutural and geometrical simplifications, which substantially changes the morphological statistics. Using digitally-reconstructed neurons, we extend the work of Path2Path as ElasticP2P, which seamlessly integrates the graph-theoretic and differential-geometric frameworks. By decomposing a neuron into a set of paths, we derive graph metrics, which are path concurrence and path hierarchy. Next, we model each path as an elastic string to compute the geodesic distance between the paths of a pair of neurons. Later, we formulate the problem of finding the distance between two neurons as a path assignment problem with a cost function combining the graph metrics and the geodesic deformation of paths.
Pseudotime reconstruction of complex transcriptional trajectories
"NeuroPath2Path: Classification and elastic morphing between neuronal arbors using path-wise similarity" - Tamal Batabyal, Barry Condron, Scott T. Acton.
Basu, Saurav, Barry Condron, and Scott T. Acton. "Path2Path: Hierarchical path-based analysis for neuron matching." Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on. IEEE, 2011.
Road smoothness toolbox monitors health of road and pavements utilizing InSAR time-series data